Supported Analysis Methods

For the following methods Biocomputing Platforms Ltd offers graphical web browser user interfaces, analysis job segmentation tools, automated workflow for running the analysis on a calculation cluster, or alternatively pure exporting of data as analysis program input files.

Download the list of supported methods here:
List of supported methods (PDF 56 kb)

Mendelian checking of inheritance patterns

PLINK [1]
PEDCHECK [2]
Merlin [3]
Mendel [4]

Linkage analysis

Merlin [3]
Allegro [5]
Genehunter, Genehunter Plus [6]
Simwalk2 [7]
Mendel [4]
Solar [8]

TDT analysis

FBAT / PBAT [9,10]
TRANSMIT [11]
QTDT [12]

Haplotyping

PHASE [13]
fastPHASE [13]
SNPHAP [14]
HaploRec [15]

Case-control analysis

PLINK [1]
Haploview [16]
HPM, HPM-G, HPM-Q [17]
HelixTree [18]
PDT [19]
ColdMap [20]
BIMBAM [21]

Population stratification

PLINK [1]
Structure [20]
Relpair [23]
Eigenstrat [24]

Epistasis

PLINK [1]

Pedigree drawing and analysis

PED5 [25]
Cranefoot [26]
Pelican [27]

Scripting

R scripts [28]
SAS scripts [29]

Data format conversions

Mega2 [30]

Data export

ASCII
SPSS
STATA
Excel (SYLK)

Imputing (in-silico genotyping)

MaCH [31]
IMPUTE [32]
SNPTEST [33]

For references, please download the list of supported methods above.